4cn3_AD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN GDE1SPA RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.35, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn3_A interface=23,26,30,31, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqee > 4cn3_D interface=22,25,29,30,78, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrddkdclidkrqrnrcqycryqkclamgmkreavqeeR
interface signature	EKKR/EKKRR

Estimated binding specificities ?

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# IC=11.534 IC/col=0.961 n_of_columns=12

specificity:

A |   8   0  80  96   0   0  24  16   0  88  96   0
C |   8   0   0   0  96  24  24   8   0   0   0  96
G |  16  96  16   0   0   0  24   8  96   8   0   0
T |  64   0   0   0   0  72  24  64   0   0   0   0

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updated Fri Dec 13 19:23:23 2024