4cn7_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO AN IDEALIZED DR1 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.34, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn7_A interface=28,31,35,36, gshmftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkrea > 4cn7_B interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerq
interface signature	EKKR/EKKR

Estimated binding specificities ?

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# IC=11.371 IC/col=0.875 n_of_columns=13

specificity:

A |   0   0  66   0   0  24  24  12   0  90   0   0  24
C |   6   0  12  96  96  24  24   6   0   0  96  96   6
G |   6  96  12   0   0  24  24   6  96   6   0   0   6
T |  84   0   6   0   0  24  24  72   0   0   0   0  60

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updated Fri Dec 13 19:23:53 2024