4cn7_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO AN IDEALIZED DR1 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.34, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn7_E interface=23,26,30,31, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqe > 4cn7_F interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRq
interface signature	EKKR/EKKRR

Estimated binding specificities ?

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# IC=10.888 IC/col=0.907 n_of_columns=12

specificity:

A |   0   0   7   0  84  24  21   0   0   9   0  72
C |   0   0   9  96   4  24   9   0   0  11  96   4
G |  96  96   4   0   4  24  62  96  96   9   0  11
T |   0   0  76   0   4  24   4   0   0  67   0   9

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updated Fri Dec 13 19:24:01 2024