4cn7_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO AN IDEALIZED DR1 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.34, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn7_E interface=23,26,30,31, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqe > 4cn7_F interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRq
interface signature	EKKR/EKKRR

Estimated binding specificities ?

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# IC=11.174 IC/col=0.931 n_of_columns=12

specificity:

A |   5   0  67   0   0   7  24   5   0  79   0   0
C |   5   0   7  96  96  11  24   5   0   0  96  96
G |  11  96  11   0   0   5  24   5  96  11   0   0
T |  75   0  11   0   0  73  24  81   0   6   0   0

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updated Mon Sep 9 21:47:13 2024