4du1_A : 3D-footprint complex

structure name	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE DT (DNA polymerase)
reference	Konigsberg et al. Biochemistry 51 4343 2012
source	Enterobacteria phage RB69
experiment	X-ray (resolution=2.15, R-factor=0.200)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B, exonuclease do;
reference complex	3qex_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4du1_A interface=706,734,800, mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqKsstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpKcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf
interface signature	KKK

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# IC=2.041 IC/col=0.255 n_of_columns=8

A |  59  14  24  24  24  24   6  84
C |  19  51  24  24  24  24   8   6
G |   6  19  24  24  24  24   6   6
T |  12  12  24  24  24  24  76   0

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updated Fri Jan 9 00:13:11 2026