interface graph thumbnail
legend  pdf

structure namePROTELOMERASE TELA COVALENTLY COMPLEXED WITH SUBSTRATE DNA
(PROTELOMERASE)
referenceAihara et al. 'Plos 11 e1001472 2013
sourceAGROBACTERIUM TUMEFACIENS
experimentX-ray (resolution=2.20, R-factor=0.204)
structural superfamilyDNA breaking-rejoining enzymes;
redundant complexes4e10 4e0y 4e0j 4dwp 4e0g 4e0z
reference complex4e0g_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureARTTISYTYKKISRLR

Estimated binding specificities ?

readout + contactlogo
# IC=7.042 IC/col=0.880 n_of_columns=8 specificity:   
A |   0  91   4   0   4   4   5  78
C |   0   1  13   4   1  17   4   6
G |   0   4  18   1  91  19   0   4
T |  96   0  61  91   0  56  87   8
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ATRA--TATAITSAYCTT----TAAAYADA----KA--KAITST----RTLT----RT--------   L     +-------------------4e0p_A    
                                                                             ! 
  ----STKTTTQTQT--CTRAMT--------------KA------YA----QG--------------   L   +-3       +-----------5u91_B    
                                                                           ! !    +--1 
  ------------------------------NARA------AT------------------NTMT--   L   ! +----2  +-----------6en1_A    
                                                                         --4      ! 
  --------------------------------------------TTQAATYG--YAKT------TT   L   !      +--------------5jk0_B    
                                                                           ! 
  ------------------------------------KC--------NT----RGST--KT------   L   +---------------------1flo_A

home
updated Fri Jan 9 00:15:05 2026