4e0g_A : 3D-footprint complex

structure name	PROTELOMERASE TELA/DNA HAIRPIN PRODUCT/VANADATE COMPLEX (PROTELOMERASE)
reference	Aihara et al. 'Plos 11 e1001472 2013
source	AGROBACTERIUM TUMEFACIENS
experiment	X-ray (resolution=2.20, R-factor=0.196)
structural superfamily	DNA breaking-rejoining enzymes;
redundant complexes	4dwp_A 4e0j_A 4e0p_A 4e0y_A 4e0z_A 4e10_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4e0g_A interface=22,24,65,66,68,69,70,72,73,99,103,106,184,186,229,233,237,238,241,299, ypktgvatsivekieraefntAgRkptvllriadfiaamngmdakqdmqalwdaeiaimngraqTTiISYiTKyrnaireafgddhpmlkiatgdaamYdeaRrvKmekiankhgalitfenyrqvlkicedclkssdplmigigligmtgrrpyevftqaefspapygkgvskwsilfngqaKtKqgegtkfgityeipvltrsetvlaaykrlresgqgklwhgmsIddfSsetRLllRdtvfnlfedvwpkeelpkpyglrhlyaevayhnfapphvtknsyfaailghnnndleTslsymtytlpedrdnalarl
interface signature	ARTTISYTKYRKKKISRLRT

Estimated binding specificities ?

readout + contact

# IC=8.644 IC/col=0.960 n_of_columns=9

specificity:

A |   8  78  70   0  89  83   0  96   0
C |   6   6  12  90   1   0   6   0   0
G |   6   6   6   0   6  12   1   0   0
T |  76   6   8   6   0   1  89   0  96

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 18:08:48 2024