4e0g_A : 3D-footprint complex

structure name	PROTELOMERASE TELA/DNA HAIRPIN PRODUCT/VANADATE COMPLEX (PROTELOMERASE)
reference	Aihara et al. 'Plos 11 e1001472 2013
source	AGROBACTERIUM TUMEFACIENS
experiment	X-ray (resolution=2.20, R-factor=0.196)
structural superfamily	DNA breaking-rejoining enzymes;
redundant complexes	4dwp_A 4e0j_A 4e0p_A 4e0y_A 4e0z_A 4e10_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4e0g_A interface=22,24,65,66,68,69,70,72,73,99,103,106,184,186,229,233,237,238,241,299, ypktgvatsivekieraefntAgRkptvllriadfiaamngmdakqdmqalwdaeiaimngraqTTiISYiTKyrnaireafgddhpmlkiatgdaamYdeaRrvKmekiankhgalitfenyrqvlkicedclkssdplmigigligmtgrrpyevftqaefspapygkgvskwsilfngqaKtKqgegtkfgityeipvltrsetvlaaykrlresgqgklwhgmsIddfSsetRLllRdtvfnlfedvwpkeelpkpyglrhlyaevayhnfapphvtknsyfaailghnnndleTslsymtytlpedrdnalarl
interface signature	ARTTISYTKYRKKKISRLRT

Estimated binding specificities ?

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# IC=9.846 IC/col=0.985 n_of_columns=10

specificity:

A |  10  96   0  90   1   0   5  10   5  85
C |  10   0   0   0   5   6   1  10   5   0
G |  64   0   0   6   0   0  90   5   0   6
T |  12   0  96   0  90  90   0  71  86   5

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Wed Dec 18 00:23:50 2024