interface graph thumbnail
legend  pdf

structure namePFV INTASOME PRIOR TO 3'-PROCESSING, APO FORM (UI-APO)
(Pro-Pol polyprotein)
referenceCherepanov et al. 'Embo 31 3020 2012
sourceHuman spumaretrovirus
experimentX-ray (resolution=2.57, R-factor=0.188)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERSP

Estimated binding specificities ?

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# IC=2.309 IC/col=0.577 n_of_columns=4 specificity:   
A |  16   8  78   2
C |  16  10   6  88
G |  16  70   6   4
T |  48   8   6   2
scan!

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updated Mon Dec 16 23:09:33 2024