4f43_A : 3D-footprint complex

structure name	PROTELOMERASE TELA MUTANT R255A COMPLEXED WITH CAAG HAIRPIN DNA (PROTELOMERASE)
reference	Aihara et al. J.Biol.Chem. 287 25551 2012
source	AGROBACTERIUM TUMEFACIENS
experiment	X-ray (resolution=2.35, R-factor=0.239)
structural superfamily	DNA breaking-rejoining enzymes;
redundant complexes	4f41_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4f43_A interface=23,25,66,67,69,70,71,73,100,104,107,185,187,230,234,238,239,242,300, dypktgvatsivekieraefntAgRkptvllriadfiaamngmdakqdmqalwdaeiaimngraqTTiISYiTkyrnaireafgddhpmlkiatgdaamYdeaRrvKmekiankhgalitfenyrqvlkicedclkssdplmigigligmtgrapyevftqaefspapygkgvskwsilfngqaKtKqgegtkfgityeipvltrsetvlaaykrlresgqgklwhgmsIddfSsetRLllRdtvfnlfedvwpkeelpkpyglrhlyaevayhnfapphvtknsyfaailghnnndleTslsymtytlpedrdnalarl
interface signature	ARTTISYTYRKKKISRLRT

Estimated binding specificities ?

readout + contact

# IC=8.265 IC/col=0.826 n_of_columns=10

specificity:

A |   0  84  24   4  82  82   4  96   0   4
C |   0   4  24   8   6   6   6   0   4  82
G |   5   4  24   4   4   4   4   0   4   6
T |  91   4  24  80   4   4  82   0  88   4

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ATRATATAITSAYCTTYARAKT--KAKCITST--RTLT----RTNADAEATT   L                          +4f43_A    
                                                             +----------------------1 
  ATRATATAITSAYCTTYARTKT--KAKTITST--RTLT----RT--DAEATT   L   !                      +4e0g_A    
                                                           --3 
  ------------NA--------KT--------TT--STRGYC----------   L   !             +--------1z1b_B    
                                                             +-------------2 
  ----------------------------AT----------------NT--MT   L                 +--------6en1_A

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updated Wed Dec 18 00:25:49 2024