4fcy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE BACTERIOPHAGE MU TRANSPOSOSOME
reference	Montano et al. Nature 491 413 2012
source	ENTEROBACTERIA PHAGE MU
experiment	X-ray (resolution=3.71, R-factor=?)
structural superfamily	Ribonuclease H-like;Homeodomain-like;mu transposase, C-terminal domain;
reference complex	4fcy_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fcy_A interface=59,60,63,102,127, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsastlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipsratafRriqqldeamvvacregehalmehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidnttggapnryrfkvkeddpkglfllmgakmhwleeyvdkhpalagaytgpnpqakpdnygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclreyrrrqkqlksatkaaikaqkq > 4fcy_B interface=56,57,59,60,63,102,121,122,123,126, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsaSTlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipSRAtaFrriqqldeamvvacregehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidntrgaankwltggapnryrfkvkeddpkglfllmgakmhwtsvvagkgwgqakpverafgvggleeyvdkhpalagaytgpygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclaaagreyrrrqkqlksatkaaikaqkqmdalevaellp
interface signature	RDYRR/STRDYRSRAF

Estimated binding specificities ?

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# IC=14.428 IC/col=0.352 n_of_columns=41

specificity:

A |   0   3  24  24  24  62  24  24  24  24  24  24  24  24  24  24  24  87  96  24  24   1   0  24   8   7   3  24  24  24  24  24  24  24  24  24  24   0   0  96  96
C |   0   3  24  24  24  11  24  24  24  24  24  24  24  24  24  24  24   3   0  24  24  92   0  24   7  11  84  24  24  24  24  24  24  24  24  24  24  96   0   0   0
G |  96  84  24  24  24  11  24  24  24  24  24  24  24  24  24  24  24   3   0  24  24   3  96  24  11  11   3  24  24  24  24  24  24  24  24  24  24   0  96   0   0
T |   0   6  24  24  24  12  24  24  24  24  24  24  24  24  24  24  24   3   0  24  24   0   0  24  70  67   6  24  24  24  24  24  24  24  24  24  24   0   0   0   0

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updated Mon Jan 5 08:57:13 2026