4fcy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE BACTERIOPHAGE MU TRANSPOSOSOME
reference	Montano et al. Nature 491 413 2012
source	ENTEROBACTERIA PHAGE MU
experiment	X-ray (resolution=3.71, R-factor=?)
structural superfamily	Ribonuclease H-like;Homeodomain-like;mu transposase, C-terminal domain;
reference complex	4fcy_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fcy_A interface=59,60,63,102,127, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsastlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipsratafRriqqldeamvvacregehalmehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidnttggapnryrfkvkeddpkglfllmgakmhwleeyvdkhpalagaytgpnpqakpdnygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclreyrrrqkqlksatkaaikaqkq > 4fcy_B interface=56,57,59,60,63,102,121,122,123,126, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsaSTlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipSRAtaFrriqqldeamvvacregehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidntrgaankwltggapnryrfkvkeddpkglfllmgakmhwtsvvagkgwgqakpverafgvggleeyvdkhpalagaytgpygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclaaagreyrrrqkqlksatkaaikaqkqmdalevaellp
interface signature	RDYRR/STRDYRSRAF

Estimated binding specificities ?

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# IC=15.286 IC/col=0.373 n_of_columns=41

specificity:

A |   0   0   4   0  24  24  24  24  24  24  24  24  24  24   0  65  69  68   0   3  24  24   0   3  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24   3   0
C |   0   0  92   0  24  24  24  24  24  24  24  24  24  24   0   9   9   9  96   0  24  24   0   3  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24  86  96
G |   0   0   0  96  24  24  24  24  24  24  24  24  24  24  96   9   9   9   0  92  24  24   0   4  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24   4   0
T |  96  96   0   0  24  24  24  24  24  24  24  24  24  24   0  13   9  10   0   1  24  24  96  86  24  24  24  24  24  24  24  24  24  24  24  69  24  24  24   3   0

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updated Mon Sep 9 21:51:00 2024