interface graph thumbnail
legend  pdf

structure nameRB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DT
(DNA polymerase)
referenceKonigsberg et al. J.Am.Chem.Soc. 135 193 2013
sourceEnterobacteria phage RB69
experimentX-ray (resolution=1.90, R-factor=0.183)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B, exonuclease do;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKKK

Estimated binding specificities ?

contactlogo
# IC=2.295 IC/col=0.287 n_of_columns=8 specificity:   
A |  73   7  24  24  24  24   7  75
C |   9  73  24  24  24  24   9   7
G |   7   9  24  24  24  24   7   7
T |   7   7  24  24  24  24  73   7
scan!

home
updated Mon Dec 16 23:18:40 2024