interface graph thumbnail
legend  pdf

structure nameRB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DT
(DNA polymerase)
referenceKonigsberg et al. J.Am.Chem.Soc. 135 193 2013
sourceEnterobacteria phage RB69
experimentX-ray (resolution=1.90, R-factor=0.183)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B, exonuclease do;
reference complex3qex_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKKK

Estimated binding specificities ?

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# IC=2.766 IC/col=0.346 n_of_columns=8 specificity:   
A |  51   7  24  24  24  24   7  96
C |  22  75  24  24  24  24   7   0
G |   7   7  24  24  24  24   7   0
T |  16   7  24  24  24  24  75   0
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updated Sat Aug 2 06:18:59 2025