interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF NTRC4 DNA-BINDING DOMAIN BOUND TO DOUBLE- STRANDED DNA
(Transcriptional regulator NtrC family)
referenceVidangos et al. J.Mol.Biol. 426 3553 2014
sourceAquifex aeolicus
experimentX-ray (resolution=3.00, R-factor=0.245)
structural superfamilyHomeodomain-like;
sequence familyBacterial regulatory protein, Fis family;
multimeric complexes4fth_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDLSNYRK

Estimated binding specificities ?

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# IC=5.339 IC/col=0.890 n_of_columns=6 specificity:   
A |  11   0   9   0   0  67
C |   9   0   9   0  96   9
G |   9   0   9  96   0  11
T |  67  96  69   0   0   9
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updated Fri Sep 13 18:13:50 2024