4fth_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NTRC4 DNA-BINDING DOMAIN BOUND TO DOUBLE- STRANDED DNA
reference	Vidangos et al. J.Mol.Biol. 426 3553 2014
source	Aquifex aeolicus
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	4fth_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fth_A interface=51,52,53,54,56,57,60, lkekswrdlsyllkikelkeakkefekifieeklreydydlkrtaeeigiDLSNlYRkiKslnirvks > 4fth_B interface=45,47,48,50,51, rdlsyllkikelkeakkefekifieeklreydydlkrtaeeigiDlSNlYRkikslnirvk
interface signature	DLSNYRK/DSNYR

Estimated binding specificities ?

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# IC=11.441 IC/col=0.763 n_of_columns=15

specificity:

A |   0   0   0   0  73  24  24  24  24   7   0   0  73  96  66
C |   0   0   0  96   7  24  24  24  24   7   0  96   7   0   7
G |   0   0  96   0   9  24  24  24  24   9  96   0   7   0   9
T |  96  96   0   0   7  24  24  24  24  73   0   0   9   0  14

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updated Mon Sep 9 21:52:42 2024