4gck_ABCD : 3D-footprint complex

structure name	STRUCTURE OF NO-DNA COMPLEX
reference	Proc.Natl.Acad.Sci.USA 110 10586 2013
source	Klebsiella pneumoniae
experiment	X-ray (resolution=2.05, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	4gck_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gck_A interface=26,36,37,38,39,41,42, rnrreeilqslalmlessdgsqritTaklaasvgvSEAAlYRhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllilgfgernpgltriltghalmfeqdrlqgrinqlferievqlrqvmrekkmregegytldetllasqllafcegmlsrfvrsefkyrptddfearwplvaaqlq > 4gck_B interface=25,36,40, nrreeilqslalmlessdgsqritTaklaasvgvsEaalYrhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllilgfgernpgltriltghalmfeqdrlqgrinqlferievqlrqvmrekkmregegytldetllasqllafcegmlsrfvrsefkyrptddfearwplvaaqlq > 4gck_C interface=26,36,37,38,39,41,42, rnrreeilqslalmlessdgsqritTaklaasvgvSEAAlYRhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllilgfgernpgltriltghalmfeqdrlqgrinqlferievqlrqvmrekkmregegytldetllasqllafcegmlsrfvrsefkyrptddfearwplvaaqlq > 4gck_D interface=25,36,40, nrreeilqslalmlessdgsqritTaklaasvgvsEaalYrhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllilgfgernpgltriltghalmfeqdrlqgrinqlferievqlrqvmrekkmregegytldetllasqllafcegmlsrfvrsefkyrptddfearwplvaaqlq
interface signature	TSEAAYR/TEY/TSEAAYR/TEY

Estimated binding specificities ?

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# IC=8.431 IC/col=0.703 n_of_columns=12

specificity:

A |   0   0  24  24   0  16  54   0  24  24  96   0
C |   0   0  24  24   0  13  16  96  24  24   0  96
G |  96   0  24  24  96  13  13   0  24  24   0   0
T |   0  96  24  24   0  54  13   0  24  24   0   0

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updated Mon Sep 9 22:04:47 2024