4gct_ABCD : 3D-footprint complex

structure name	STRUCTURE OF NO FACTOR PROTEIN-DNA COMPLEX
reference	Proc.Natl.Acad.Sci.USA 110 10586 2013
source	Vibrio cholerae O1 biovar El Tor
experiment	X-ray (resolution=2.45, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gct_A interface=26,36,37,38,39,41,42, inrreeilqalaemlesnegasritTaklakqvgvSEAAlYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_B interface=25,36,37,40,41, nrreeilqalaemlesnegasritTaklakqvgvsEAalYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_C interface=26,36,37,38,39,41,42, inrreeilqalaemlesnegasritTaklakqvgvSEAAlYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_D interface=25,35,36,37,40,41, nrreeilqalaemlesnegasritTaklakqvgvSEAalYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik
interface signature	TSEAAYR/TEAYR/TSEAAYR/TSEAYR

Estimated binding specificities ?

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# IC=12.713 IC/col=0.795 n_of_columns=16

specificity:

A |   0   0  24  24   0   0  58   0  20  24  96   0  35   9  96  86
C |   0   0  24  24   0   0  13  96  16  24   0  96  15   9   0   4
G |  96   0  24  24  96   0   9   0  11  24   0   0  44  13   0   4
T |   0  96  24  24   0  96  16   0  49  24   0   0   2  65   0   2

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updated Fri Dec 13 19:44:08 2024