4gct_ABCD : 3D-footprint complex

structure name	STRUCTURE OF NO FACTOR PROTEIN-DNA COMPLEX
reference	Proc.Natl.Acad.Sci.USA 110 10586 2013
source	Vibrio cholerae O1 biovar El Tor
experiment	X-ray (resolution=2.45, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	5haw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gct_A interface=26,36,37,38,39,41,42, inrreeilqalaemlesnegasritTaklakqvgvSEAAlYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_B interface=25,36,37,40,41, nrreeilqalaemlesnegasritTaklakqvgvsEAalYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_C interface=26,36,37,38,39,41,42, inrreeilqalaemlesnegasritTaklakqvgvSEAAlYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik > 4gct_D interface=25,35,36,37,40,41, nrreeilqalaemlesnegasritTaklakqvgvSEAalYRhfpsktrmfegliefieeslmsrinrifdeekdtlnrirlvmqlllafaernpgltrilsghalmfenerlrdrinqlferietslrqilrerklregksfpvdenilaaqllgqvegslnrfvrsdfkylptanfdeywallsaqik
interface signature	TSEAAYR/TEAYR/TSEAAYR/TSEAYR

Estimated binding specificities ?

readout + contact

# IC=12.678 IC/col=0.792 n_of_columns=16

specificity:

A |   0   0  24  24   0   1  60   0  12  24  96   0  31  11  96  87
C |   0   0  24  24   0   2   8  96  24  24   0  96  15  11   0   4
G |  96   0  24  24  96   0   6   0  11  24   0   0  46   8   0   2
T |   0  96  24  24   0  93  22   0  49  24   0   0   4  66   0   3

scan!

home
updated Mon Sep 9 22:05:51 2024