4gg4_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TAL EFFECTOR DHAX3 BOUND TO SPECIFIC DNA-RNA HYBRID (HAX3)
reference	Yan et al. 'Cell 2 707 2012
source	XANTHOMONAS CAMPESTRIS PV. ARMORACIAE
experiment	X-ray (resolution=2.50, R-factor=0.195)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
reference complex	4osh_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gg4_A interface=68,102,136,272,340,408, garalealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasnIggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkkl
interface signature	DDDIDD

Estimated binding specificities ?

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# IC=10.669 IC/col=0.889 n_of_columns=12

specificity:

A |   0   0   0   0  24  24   9  67   0   0  11   0
C |   0  96  96  96  24  24   9   9   0  96   9  96
G |   0   0   0   0  24  24   9   9   0   0   9   0
T |  96   0   0   0  24  24  69  11  96   0  67   0

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updated Thu Sep 12 19:24:18 2024