4osh_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TAL EFFECTOR DHAX3 WITH NI RVD AT 2.2 ANGSTROM RESOLUTION (HAX3)
reference	Yan et al. 'Protein 5 297 2014
source	XANTHOMONAS CAMPESTRIS PV. ARMORACIAE
experiment	X-ray (resolution=2.20, R-factor=0.207)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
redundant complexes	4gg4_A 4osi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4osh_B interface=34,69,103,136,137,273,341,409, sgaralealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiasHDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasnIggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkkl
interface signature	RDDHDIDD

Estimated binding specificities ?

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# IC=10.108 IC/col=0.842 n_of_columns=12

specificity:

A |   0  73   0  73   7  96  24  24   0   0   0  66
C |   0   7   0   9   9   0  24  24   0   0   0   7
G |  96   7  96   7   7   0  24  24  96  96  96   9
T |   0   9   0   7  73   0  24  24   0   0   0  14

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updated Fri Sep 13 18:35:41 2024