4h5q_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN HEXAMER BOUND TO SINGLE-STRANDED DNA
reference	Raymond et al. Proc.Natl.Acad.Sci.USA 109 19208 2012
source	Rift valley fever virus
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	UBA-like;
reference complex	4h5q_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4h5q_A interface=27,63,93,102,124,144,170,173,174,177,178,181,192,193,195,196,199, yqelaiqfaaqavdrneieqwvrefaYqgfdarrviellkqyggadwekdakkmivlaltrgNkprrmmmkmskegkatvealinkyklkegNpsrdeltlSrvaaalagrtcqalvvlsewlPvtgttmdglspayprhmmhPsfagmvdpslpgdylraildahslyLlqFSrvINpnLrgrtkeevaaTFtQPmnAavnsnfishekrreflkafglvdsngkpsaavmaaaqayktaa > 4h5q_B interface=28,64,94,103,125,174,178,196,197,200, nyqelaiqfaaqavdrneieqwvrefaYqgfdarrviellkqyggadwekdakkmivlaltrgNkprrmmmkmskegkatvealinkyklkegNpsrdeltlSrvaaalagrtcqalvvlsewlPvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqFsrvInpnlrgrtkeevaatftQPmnAavnsnfishekrreflkafglvdsngkpsaavmaaaqayktaa > 4h5q_C interface=28,62,64,94,103,125,174,178,196,197, nyqelaiqfaaqavdrneieqwvrefaYqgfdarrviellkqyggadwekdakkmivlaltRgNkprrmmmkmskegkatvealinkyklkegNpsrdeltlSrvaaalagrtcqalvvlsewlPvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqFsrvInpnlrgrtkeevaatftQPmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqayktaa
interface signature	YNNSPPLFSINLTFQPA/YNNSPFIQPA/YRNNSPFIQP

Estimated binding specificities ?

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# IC=15.135 IC/col=1.164 n_of_columns=13

specificity:

A |   0   0   0   0   0   0  13   0   0   0  13   0   0
C |   0   0   0   0   0   0  13   0   0   0  13   0   0
G |   0   0   0   0   0   0  16   0   0   0  13   0   0
T |  96  96  96  96  96  96  54  96  96  96  57  96  96

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updated Mon Sep 9 22:13:34 2024