4hf1_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ISCR BOUND TO ITS PROMOTER
reference	Rajagopalan et al. Nat.Struct.Mol.Biol. 20 740 2013
source	Escherichia coli
experiment	X-ray (resolution=2.22, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hf1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hf1_A interface=38,40,41,43,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdesvdalthalwrdlsdrltgflnnitlgelvnnqevldvsgrqht > 4hf1_B interface=38,40,41,43,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdaqgkggaqggdkalthalwrdlsdrltgflnnitlgelvnnqevl
interface signature	SSYEQRP/SSYEQRP

Estimated binding specificities ?

readout + contact

# IC=10.874 IC/col=0.572 n_of_columns=19

specificity:

A |  14  19   0   0  24   0  96  24  24  24  24  24  24  14   0  96  24   1   0
C |  67   0  96  96  24  33   0  24  24  24  24  24  24  19   0   0  24   0   0
G |  11  15   0   0  24   1   0  24  24  24  24  24  24  49   0   0  24  91  96
T |   4  62   0   0  24  62   0  24  24  24  24  24  24  14  96   0  24   4   0

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updated Mon Sep 9 22:14:07 2024