4hf2_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E43A ISCR MUTANT BOUND TO ITS PROMOTER
reference	Rajagopalan et al. Nat.Struct.Mol.Biol. 20 740 2013
source	Escherichia coli
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hf1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hf2_A interface=38,40,41,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgiSlSYlaQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdesalthalwrdlsdrltgflnnitlgelvnn > 4hf2_B interface=40,41,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgislSYlaQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdggdkalthalwrdlsdrltgflnnitlgelvnnqevl
interface signature	SSYQRP/SYQRP

Estimated binding specificities ?

readout + contact

# IC=12.084 IC/col=0.525 n_of_columns=23

specificity:

A |  92  24   9  24  24  24   0  96   1  24  24  24  24  24   1   0  96   5  24  24   5   9   1
C |   0  24   7  24  24  24  96   0  89  24  24  24  24  24   1   0   0   8  24  24   8  21   1
G |   3  24  25  24  24  24   0   0   5  24  24  24  24  24  91   0   0   1  24  24   1   7   1
T |   1  24  55  24  24  24   0   0   1  24  24  24  24  24   3  96   0  82  24  24  82  59  93

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updated Mon Sep 9 22:14:29 2024