4hja_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE POT1PC BOUND TO SSDNA (ACGGTTACGGT) (Protection of telomeres protein 1)
reference	Dickey et al. Structure 21 121 2013
source	Schizosaccharomyces pombe
experiment	X-ray (resolution=2.10, R-factor=0.198)
structural superfamily	Nucleic acid-binding proteins;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hja_A interface=23,25,26,34,45,47,53,54,55,66,68,70,71,95,97,98,99,101,103,105,107, dsfsllsqitphqrcsfyaqviKtWYsdknftlYvtdytenelfFpMspytsSSRwrgpfgrfsiRcIlWDehdfycrnyikegdyvvmknvrtKiDHLgYlEcIlHgdsakrynmsiekvdseepelneiksrkrlyv

  
  ------KG--WGYT----------YCFA--MASGSGRG------RT--IG--WGDG------KG--DTHTLTYAEGIGHG----------   L                          +----4hja_A    
                                                                                                             +------------1 
  --YT------------------------------------------------YGDG--ST--------------------HTYTRT----   L           +-2            +----3kjp_A    
                                                                                                           ! ! 
  ----FG--YG----------YT------------------------------------------RG--YG--------------------   L     +-----4 +-----------------2i0q_A    
                                                                                                     !     ! 
  --------------------------------------------NT--SG--WG--------KG----FG----EG----------EGTG         !     ! +-----------------3u58_C    
                                                                                                   +-5     +-3 
  ------------------------------------------QC--HC--FA--------TG--RG--YC--RC----------------       ! !       +-----------------6bwy_A    
                                                                                                 --6 ! 
  TGYG----SG--DGKGATFT--SGVGNGYTLG----YG------KG------YT------------------------------------   L   ! +------------------------1s40_A    
                                                                                                   ! 
  --YT----------------------NTYT----SGFGRGET--HA--LT------IT--------------------------LT----   L   +-------------------------6lbr_A

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updated Fri Sep 13 18:19:55 2024