4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hqe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

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# IC=9.635 IC/col=0.602 n_of_columns=16

specificity:

A |   3   0  24   0  65  24  24  24  24  24   3  96   3  96   3  80
C |   6   0  24   0  11  24  24  24  24  24   6   0  21   0  84   6
G |  84   0  24   0   9  24  24  24  24  24   3   0   3   0   3   3
T |   3  96  24  96  11  24  24  24  24  24  84   0  69   0   6   7

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updated Wed Jun 24 21:05:27 2026