4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hqe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

readout + contact

# IC=9.493 IC/col=0.593 n_of_columns=16

specificity:

A |   3   0  24   0  70  24  24  24  24  24   3  96   6  96   3  75
C |   3   0  24   0   6  24  24  24  24  24   7   0  27   0  86   6
G |  86   0  24   0   6  24  24  24  24  24   3   0   6   0   3   6
T |   4  96  24  96  14  24  24  24  24  24  83   0  57   0   4   9

scan!

home
updated Mon Jan 5 09:25:42 2026