4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hqe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

readout + contact

# IC=9.828 IC/col=0.614 n_of_columns=16

specificity:

A |   6   0  24   0  60  24  24  24  24  24  10  96   5  96   6  85
C |   5   0  24   0  10  24  24  24  24  24   0   0  36   0  85   1
G |  85   0  24   0  11  24  24  24  24  24   0   0   5   0   0   0
T |   0  96  24  96  15  24  24  24  24  24  86   0  50   0   5  10

scan!

home
updated Wed Jul 30 01:24:46 2025