4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hqe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

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# IC=10.857 IC/col=0.679 n_of_columns=16

specificity:

A |   8   4   0  62   0  87  24  24  24  24  24   4  96   5  96   4
C |   1   4   0  12   0   0  24  24  24  24  24   4   0  25   0  88
G |   0  84   0  22   0   4  24  24  24  24  24   5   0   8   0   4
T |  87   4  96   0  96   5  24  24  24  24  24  83   0  58   0   0

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updated Mon Sep 9 22:15:29 2024