4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

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# IC=10.761 IC/col=0.673 n_of_columns=16

specificity:

A |   3   3   0  70   0  84  24  24  24  24  24   7  96   7  96   5
C |   6   6   0   3   0   3  24  24  24  24  24   3   0  16   0  88
G |   3  84   0  18   0   6  24  24  24  24  24   3   0   7   0   3
T |  84   3  96   5  96   3  24  24  24  24  24  83   0  66   0   0

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updated Fri Dec 13 19:54:55 2024