interface graph thumbnail
legend  pdf

structure nameTHE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
(Transcriptional regulator QsrR)
referenceZhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
sourceStaphylococcus aureus
experimentX-ray (resolution=2.30, R-factor=0.208)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyHxlRlike helixturnhelix;
multimeric complexes4hqe_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFTPRAL

Estimated binding specificities ?

readout + contactlogo
# IC=4.337 IC/col=0.867 n_of_columns=5 specificity:   
A |   0  12  48   0  96
C |   0  24  12   0   0
G |  96  12  12   0   0
T |   0  48  24  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------RGSTRTSTHG--------------RA--   L                                 +3zpl_B    
                                                                     +---1 
  ------------NASTRGHT--STFT--------   L                 +-----------3   +1vtn_C    
                                                         !           ! 
  ------------NASTRTHT--STLT--------   L            +----6           +---4lg0_A    
                                                    !    ! 
  TT------KATTQTTG--LTRT----KA--FTYT   L        +---7    +---------------2p7c_B    
                                                !   ! 
  ------------NASTRGHT--STLT--------   L        !   !             +------7cby_C    
                                                !   +-------------4 
  ------------NASTRTHT--ST----------   L   +----8                 +------3l2c_A    
                                           !    ! 
  ----DCLT--AGTTRG----RG--------RA--   L   !    !                        +5h3r_A    
                                           !    !         +--------------2 
  --------------RC--YG--------KT----     --9    +---------5              +2acj_B    
                                           !              ! 
  --VTSARGTA--RT--------------------   L   !              +--------------6za3_B    
                                           ! 
  ------------------YG--------------       +-----------------------------3eyi_B    
                                         

home
updated Mon Jun 29 18:04:38 2026