interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX
referenceNeidle et al.
sourceAcinetobacter sp.
experimentX-ray (resolution=3.10, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
reference complex4iht_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTAQPPRR/TAQPPSRR

Estimated binding specificities ?

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# IC=14.832 IC/col=0.781 n_of_columns=19 specificity:   
A |   2  11   0  96   5  81   0  88  24  24  24  24  24   2   0   0  75   0  90
C |   5   8  92   0   5   4  96   0  24  24  24  24  24   0   0   0   5   0   2
G |   2  69   2   0   2   0   0   0  24  24  24  24  24  92  96   0   5   0   2
T |  87   8   2   0  84  11   0   8  24  24  24  24  24   2   0  96  11  96   2
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updated Wed Jun 24 21:08:38 2026