interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX
referenceNeidle et al.
sourceAcinetobacter sp.
experimentX-ray (resolution=3.10, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
reference complex4iht_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTAQPPRR/TAQPPSRR

Estimated binding specificities ?

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# IC=14.253 IC/col=0.750 n_of_columns=19 specificity:   
A |   3  96  14  96   0   0  24  24  24  24  24  12   0   9  70   0   3   6  86
C |   3   0   6   0  96  96  24  24  24  24  24   0   0   0   9   0   3  75   3
G |   4   0  12   0   0   0  24  24  24  24  24   1  96   0   5   0  87   9   3
T |  86   0  64   0   0   0  24  24  24  24  24  83   0  87  12  96   3   6   4
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updated Mon Jan 5 09:28:55 2026