4ihv_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP SEQUENCE DNA F28 (AAATTTGTTTGAGCGTTGAGCAAATTT)
reference	Hancock et al. 'Nucleic 41 6750 2013
source	Escherichia coli
experiment	X-ray (resolution=2.72, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ihv_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 4ihv_B interface=75,84,85,87,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn
interface signature	TNRTR/TNRTR

Estimated binding specificities ?

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# IC=8.231 IC/col=0.484 n_of_columns=17

specificity:

A |   4   0  24  24   4  84  24  24  24  24  24   4  84  24  76   0  84
C |   4   0  24  24  12   4  24  24  24  24  24  84   4  24   8  96   4
G |   4  96  24  24   4   4  24  24  24  24  24   4   4  24   8   0   4
T |  84   0  24  24  76   4  24  24  24  24  24   4   4  24   4   0   4

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updated Mon Sep 9 22:18:57 2024