4ihv_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP SEQUENCE DNA F28 (AAATTTGTTTGAGCGTTGAGCAAATTT)
reference	Hancock et al. 'Nucleic 41 6750 2013
source	Escherichia coli
experiment	X-ray (resolution=2.72, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ihv_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 4ihv_B interface=75,84,85,87,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn
interface signature	TNRTR/TNRTR

Estimated binding specificities ?

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# IC=7.982 IC/col=0.470 n_of_columns=17

specificity:

A |   6   0  12  24   3   3  24  24  24  24  24   3  36  24  24   0  90
C |   0   0   9  24  15   9  24  24  24  24  24   3   3  24  24  96   0
G |   0  96   6  24   6  78  24  24  24  24  24   6  54  24  24   0   6
T |  90   0  69  24  72   6  24  24  24  24  24  84   3  24  24   0   0

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updated Fri Dec 13 19:58:30 2024