4ihw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP INOSINE SUBSTITUTED DNA F28- DI (AAATTTGTTTGAICITTGAGCAAATTT)
reference	Hancock et al. 'Nucleic 41 6750 2013
source	Escherichia coli
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ihw_A interface=68,77,78,80,82,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRKklkkygmn > 4ihw_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTRK/TNRR

Estimated binding specificities ?

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# IC=6.968 IC/col=0.410 n_of_columns=17

specificity:

A |   0   0  24  24   3  92  24  24  24  24  24  10  24  24  49   0  96
C |   5   0  24  24  42   3  24  24  24  24  24  32  24  24   7  96   0
G |   3  96  24  24   2   1  24  24  24  24  24  15  24  24  23   0   0
T |  88   0  24  24  49   0  24  24  24  24  24  39  24  24  17   0   0

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updated Fri Dec 13 19:58:43 2024