4ihw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP INOSINE SUBSTITUTED DNA F28- DI (AAATTTGTTTGAICITTGAGCAAATTT)
reference	Hancock et al. 'Nucleic 41 6750 2013
source	Escherichia coli
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ihw_A interface=68,77,78,80,82,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRKklkkygmn > 4ihw_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTRK/TNRR

Estimated binding specificities ?

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# IC=6.660 IC/col=0.392 n_of_columns=17

specificity:

A |   4   0   0  24  24  12  24  24  24  24  24   8  40  24  24   0  96
C |   8   0  12  24  24  16  24  24  24  24  24   4   8  24  24  96   0
G |   8  96   4  24  24  56  24  24  24  24  24   8  44  24  24   0   0
T |  76   0  80  24  24  12  24  24  24  24  24  76   4  24  24   0   0

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updated Mon Sep 9 22:19:14 2024