4ihy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP INOSINE SUBSTITUTED DNA F29-DI (AAATTTGTTTGIICICTGAGCAAATTT)
reference	Hancock et al. 'Nucleic 41 6750 2013
source	Escherichia coli
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ihy_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 4ihy_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=8.803 IC/col=0.518 n_of_columns=17

specificity:

A |   2   0   4  24  21   2  24  24  24  24  24   2  49  24  12   0  96
C |   2   0  14  24  21   3  24  24  24  24  24   0   1  24   8  96   0
G |   3  96  14  24  10  89  24  24  24  24  24   2  46  24  68   0   0
T |  89   0  64  24  44   2  24  24  24  24  24  92   0  24   8   0   0

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updated Mon Sep 9 22:19:34 2024