4j19_AB : 3D-footprint complex

structure name	STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA
reference	Londono-Vallejo et al. 'Embo 32 1681 2013
source	Homo sapiens
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	4j19_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4j19_A interface=3,59,60,64,67, gsRftwrkeclavmesyfnenqypdeakreeianacnaviqkpgkklsdlervtslkvYNwfaNrrKeikrraniea > 4j19_B interface=1,5,61,62,66,69, RrgsRftwrkeclavmesyfnenqypdeakreeianacnaviqkpgkklsdlervtslkvYNwfaNrrKeikrran
interface signature	RYNNK/RRYNNK

Estimated binding specificities ?

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# IC=13.780 IC/col=1.060 n_of_columns=13

specificity:

A |   6   4  82  96   4   0   0   4  96  88   0   0   4
C |  82   6   6   0  82  96  96   6   0   0  96  96  82
G |   4   4   4   0   4   0   0   4   0   4   0   0   4
T |   4  82   4   0   6   0   0  82   0   4   0   0   6

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updated Wed Jul 30 01:33:17 2025