4j19_AB : 3D-footprint complex

structure name	STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA
reference	Londono-Vallejo et al. 'Embo 32 1681 2013
source	Homo sapiens
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	4j19_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4j19_A interface=3,59,60,64,67, gsRftwrkeclavmesyfnenqypdeakreeianacnaviqkpgkklsdlervtslkvYNwfaNrrKeikrraniea > 4j19_B interface=1,5,61,62,66,69, RrgsRftwrkeclavmesyfnenqypdeakreeianacnaviqkpgkklsdlervtslkvYNwfaNrrKeikrran
interface signature	RYNNK/RRYNNK

Estimated binding specificities ?

readout + contact

# IC=13.746 IC/col=1.057 n_of_columns=13

specificity:

A |   4   4  82  96   4   0   0   6  96  86   0   0   4
C |  82   6   4   0  84  96  96   4   0   2  96  96  82
G |   4   4   4   0   4   0   0   4   0   4   0   0   6
T |   6  82   6   0   4   0   0  82   0   4   0   0   4

scan!

home
updated Mon Sep 9 22:23:24 2024