| structure name | STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA (Homeobox-containing protein 1) |
| reference | Londono-Vallejo et al. 'Embo 32 1681 2013 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.90, R-factor=0.174) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 4j19_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRYNNK |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 8 8 72 0 C | 0 0 8 8 8 8 G | 96 96 8 8 8 80 T | 0 0 72 72 8 8scan! |
Dendrogram of similar interfaces ?
matrix format------RA------YAQTNAAARG-- L +-----------------------------6wig_A +-1 --KG--RT------IAQCNAYA--RT L +-2 +-----------------------------1nk2_P ! ! ------RT------VAQTNA------ L +-3 +-----------------------------5hod_A ! ! ------RT------NT--NAIARG-- L +-4 +-----------------------------1b72_B ! ! --RC--RT------NT--NAITRG-- +-5 +-----------------------------5zjt_B ! ! ----------RT--YT---------- L +-6 +-----------------------------7pik_B ! ! RC----RT------ITQCNAACRG-- L +-7 +-----------------------------6a8r_A ! ! ------RT----FTYAQTNAATRG-- L +-8 +-----------------------------6ryd_F ! ! ------RA----RCVTCTNAQTRC-- L --9 +-----------------------------1au7_A ! ----RC--RT----NCSTNARG---- L +-----------------------------1mnm_C |
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updated Fri Sep 13 18:24:47 2024