4kdp_AB : 3D-footprint complex

structure name	TCAR-SSDNA COMPLEX CRYSTAL STRUCTURE REVEALS THE NOVEL SSDNA BINDING MECHANISM OF THE MARR FAMILY PROTEINS
reference	Chen et al. 'Nucleic 42 5314 2014
source	Staphylococcus epidermidis
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4kdp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kdp_A interface=37,65,70,74,92,93, mvrriedhisflekfindvntltakllkdlqteygiSaeqshvlnmlsiealtvgqitekqgvnKaavsRrvkKllnaelvklekpdsntdQRlkiiklsnkgkkyikerkaimshiasdmtsdfdskeiekvrqvleiidyriqsytskl > 4kdp_B interface=37,39,65,70,71,74, mvrriedhisflekfindvntltakllkdlqteygiSaEqshvlnmlsiealtvgqitekqgvnKaavsRRvkKllnaelvklekpdsntdqrlkiiklsnkgkkyikerkaimshiasdmtsdfdskeiekvrqvleiidyriqsytskl
interface signature	SKRKQR/SEKRRK

Estimated binding specificities ?

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# IC=6.675 IC/col=0.607 n_of_columns=11

specificity:

A |   4   0   9  96   9  19   0  24  24  24  88
C |  81   0  67   0  11  38   0  24  24  24   4
G |   4  96  11   0  67  19  96  24  24  24   2
T |   7   0   9   0   9  20   0  24  24  24   2

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updated Mon Sep 9 22:44:24 2024