4kfc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HYPERACTIVE MUTANT OF RESPONSE REGULATOR KDPE COMPLEXED TO ITS PROMOTER DNA
reference	Narayanan et al. 'Nat 5 3282 2014
source	Escherichia coli
experiment	X-ray (resolution=2.53, R-factor=?)
structural superfamily	CheY-like;
reference complex	4kfc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kfc_A interface=188,189,191,192,193, amanvlivedeqairrflrtalegdgmrvfeaetlqrglleaatrkpdliildlglpdgdgiefirdlrqwsavpvivlsarseesdkiaaldagaddylskpfgigelqarlrvalrrhsapdplvkfsdvtvdlaarvihrgeeevhltpiefrllavllnnagkvltqrqllnqvwgpnavehsHYlRIYmghlrqkleqdparprhfitatgigyrfml > 4kfc_B interface=189,192,193,194, amanvlivedeqairrflrtalegdgmrvfeaetlqrglleaatrkpdliildlglpdgdgiefirdlrqwsavpvivlsarseesdkiaaldagaddylskpfgigelqarlrvalrrhstapdplvkfsdvtvdlaarvihrgeeevhltpiefrllavllnnagkvltqrqllnqvwgpnavehsHylRIYmghlrqkleqdparprhfitatgigyrfml
interface signature	HYRIY/HRIY

Estimated binding specificities ?

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# IC=11.166 IC/col=0.620 n_of_columns=18

specificity:

A |   0   0   1  96  85  59  61  24  24  24  24   0  24  24  61  96  76  80
C |   0   0   4   0   5  23  23  24  24  24  24   0  24  24  21   0   8   5
G |   0  96   1   0   3   7   5  24  24  24  24   0  24  24   7   0   5   1
T |  96   0  90   0   3   7   7  24  24  24  24  96  24  24   7   0   7  10

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updated Mon Sep 9 22:44:30 2024