4kfc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HYPERACTIVE MUTANT OF RESPONSE REGULATOR KDPE COMPLEXED TO ITS PROMOTER DNA
reference	Narayanan et al. 'Nat 5 3282 2014
source	Escherichia coli
experiment	X-ray (resolution=2.53, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kfc_A interface=188,189,191,192,193, amanvlivedeqairrflrtalegdgmrvfeaetlqrglleaatrkpdliildlglpdgdgiefirdlrqwsavpvivlsarseesdkiaaldagaddylskpfgigelqarlrvalrrhsapdplvkfsdvtvdlaarvihrgeeevhltpiefrllavllnnagkvltqrqllnqvwgpnavehsHYlRIYmghlrqkleqdparprhfitatgigyrfml > 4kfc_B interface=189,192,193,194, amanvlivedeqairrflrtalegdgmrvfeaetlqrglleaatrkpdliildlglpdgdgiefirdlrqwsavpvivlsarseesdkiaaldagaddylskpfgigelqarlrvalrrhstapdplvkfsdvtvdlaarvihrgeeevhltpiefrllavllnnagkvltqrqllnqvwgpnavehsHylRIYmghlrqkleqdparprhfitatgigyrfml
interface signature	HYRIY/HRIY

Estimated binding specificities ?

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# IC=12.030 IC/col=0.668 n_of_columns=18

specificity:

A |   0   0   0  96  92  49  51  24  24  24  24   0  24  24  51  96  92  94
C |   0   0   0   0   1  17  17  24  24  24  24   0  24  24  17   0   1   1
G |   0  96   0   0   3  15  15  24  24  24  24   0  24  24  15   0   1   0
T |  96   0  96   0   0  15  13  24  24  24  24  96  24  24  13   0   2   1

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updated Fri Dec 13 20:25:33 2024