4kis_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A LSR-DNA COMPLEX (Putative integrase Bacteriophage A118)
reference	Van Duyne et al. 'Nucleic 41 8341 2013
source	Listeria innocua
experiment	X-ray (resolution=3.20, R-factor=0.239)
sequence family	Recombinase;
reference complex	6dnw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kis_D interface=4,8,24,75,76,127,130,154,155,156,158,163,165,167,174, rdrMvmgKikrieaglplttakgRtfgydvidtklyineeeakqlrliydifeeeqsitflqkrlkklgfkvrtYNrynnwltndlycgyvsykdkvhvkgihepiiseeqfyrvqeifsrmgknpNmnKesasllnnlvvcskcglgfvhrrKDTvSrgkkYhYrYyscktyKhthelekcgnkiwradkleeliidrvnnysfasrnidkelneklkieidaqinyyeaqieaneelkknkkiqefnslefrekqlylkslinkiyidgeqvtiewllehhhhhh
interface signature	MKRYNNKKDTSYYYK

Estimated binding specificities ?

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# IC=17.174 IC/col=0.687 n_of_columns=25

specificity:

A |   0   0   0  96   5  24  24  24  10   5   0  24  24   0   0  24  24  24   5   3  10  24   3   0   0
C |   0   0   0   0   3  24  24  24  67   3  96  24  24   0   0  24  24  24  88   3  64  24   8   0   0
G |   0   0   0   0  85  24  24  24  10   3   0  24  24   0   0  24  24  24   0   5  10  24   7   0  96
T |  96  96  96   0   3  24  24  24   9  85   0  24  24  96  96  24  24  24   3  85  12  24  78  96   0

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updated Thu Sep 12 19:43:14 2024