4kis_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A LSR-DNA COMPLEX (Putative integrase Bacteriophage A118)
reference	Van Duyne et al. 'Nucleic 41 8341 2013
source	Listeria innocua
experiment	X-ray (resolution=3.20, R-factor=0.239)
sequence family	Recombinase;
reference complex	6dnw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kis_D interface=4,8,24,75,76,127,130,154,155,156,158,163,165,167,174, rdrMvmgKikrieaglplttakgRtfgydvidtklyineeeakqlrliydifeeeqsitflqkrlkklgfkvrtYNrynnwltndlycgyvsykdkvhvkgihepiiseeqfyrvqeifsrmgknpNmnKesasllnnlvvcskcglgfvhrrKDTvSrgkkYhYrYyscktyKhthelekcgnkiwradkleeliidrvnnysfasrnidkelneklkieidaqinyyeaqieaneelkknkkiqefnslefrekqlylkslinkiyidgeqvtiewllehhhhhh
interface signature	MKRYNNKKDTSYYYK

Estimated binding specificities ?

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# IC=17.401 IC/col=0.696 n_of_columns=25

specificity:

A |   0  96  72  24   8  84   0  24  24  24  96  96  24  24   0  84  12  24  24  24   4   0  96  96  96
C |  96   0   8  24   4   4   0  24  24  24   0   0  24  24   0   4  12  24  24  24  84   0   0   0   0
G |   0   0  12  24  76   4  92  24  24  24   0   0  24  24  96   4  68  24  24  24   4   0   0   0   0
T |   0   0   4  24   8   4   4  24  24  24   0   0  24  24   0   4   4  24  24  24   4  96   0   0   0

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updated Sat Aug 2 06:50:58 2025