6dnw_A : 3D-footprint complex

structure name	SEQUENCE REQUIREMENTS OF THE LISTERIA INNOCUA PROPHAGE ATTP SITE (Putative integrase Bacteriophage A118)
reference	Van Duyne et al. 'J. 430 4401 2018
source	Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) / Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
experiment	X-ray (resolution=2.85, R-factor=0.221)
sequence family	Recombinase;
redundant complexes	4kis_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dnw_A interface=3,7,23,74,75,126,129,151,153,154,155,157,162,164,166,173, drMvmgKikrieaglplttakgRtfgydvidtklyineeeakqlrliydifeeeqsitflqkrlkklgfkvrtYNrynnwltndlycgyvsykdkvhvkgihepiiseeqfyrvqeifsrmgknpNmnKesasllnnlvvcskcglgfvhRrKDTvSrgkkYhYrYyscktyKhthelekcgnkiwradkleeliidrvnnylefrekqlylkslinkiyidgeqvtiewl
interface signature	MKRYNNKRKDTSYYYK

Estimated binding specificities ?

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# IC=14.050 IC/col=0.739 n_of_columns=19

specificity:

A |   5  24  24   5  96  96  24  24   0  96   5  24  24   5   0   0  79  96  96
C |   5  24  24  79   0   0  24  24   6   0   7  24  24  81  96   0   5   0   0
G |  79  24  24   7   0   0  24  24  90   0  79  24  24   5   0   0   7   0   0
T |   7  24  24   5   0   0  24  24   0   0   5  24  24   5   0  96   5   0   0

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updated Fri Sep 13 21:32:35 2024