4l62_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA TRANSCRIPTIONAL REGULATOR PA2196 BOUND TO ITS OPERATOR DNA
reference	Choe et al. Biochem.Biophys.Res.Commun. 440 317 2013
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4l62_A interface=27,38,40,42,43, syddtrqhlldtgyrimavkgfsgvgLneilqsagvpKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_B interface=25,34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglNeilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_C interface=27,28,40,42, syddtrqhlldtgyrimavkgfsgvgLNeilqsagvpkgSfYhyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_D interface=34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglneilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle
interface signature	LKSYH/NPKSYH/LNSY/PKSYH

Estimated binding specificities ?

readout + contact

# IC=17.229 IC/col=1.013 n_of_columns=17

specificity:

A |   0   0  96   9  96   0   6  86   0   3   6   0   0   3  24  72  92
C |  96   0   0   4   0  96   9   3  96   3   8   0   0  87  24   6   1
G |   0   0   0  80   0   0  72   4   0   0  76  96   0   3  24   9   0
T |   0  96   0   3   0   0   9   3   0  90   6   0  96   3  24   9   3

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updated Fri Dec 13 20:35:10 2024