4l62_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA TRANSCRIPTIONAL REGULATOR PA2196 BOUND TO ITS OPERATOR DNA
reference	Choe et al. Biochem.Biophys.Res.Commun. 440 317 2013
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	4l62_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4l62_A interface=27,38,40,42,43, syddtrqhlldtgyrimavkgfsgvgLneilqsagvpKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_B interface=25,34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglNeilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_C interface=27,28,40,42, syddtrqhlldtgyrimavkgfsgvgLNeilqsagvpkgSfYhyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_D interface=34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglneilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle
interface signature	LKSYH/NPKSYH/LNSY/PKSYH

Estimated binding specificities ?

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# IC=17.165 IC/col=1.010 n_of_columns=17

specificity:

A |   0   0  96   9  96   0   9  92   0   3   6   0   0   3  24  69  92
C |  96   0   0   5   0  96   3   1  96   3   6   0   0  86  24   9   4
G |   0   0   0  76   0   0  72   0   0   3  76  96   0   3  24   9   0
T |   0  96   0   6   0   0  12   3   0  87   8   0  96   4  24   9   0

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updated Mon Sep 9 22:53:23 2024