4l62_EFGH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA TRANSCRIPTIONAL REGULATOR PA2196 BOUND TO ITS OPERATOR DNA
reference	Choe et al. Biochem.Biophys.Res.Commun. 440 317 2013
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	4l62_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4l62_E interface=27,38,40,42,43, syddtrqhlldtgyrimavkgfsgvgLneilqsagvpKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_F interface=25,34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglNeilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_G interface=25,34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglNeilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_H interface=27,28,42, syddtrqhlldtgyrimavkgfsgvgLNeilqsagvpkgsfYhyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle
interface signature	LKSYH/NPKSYH/NPKSYH/LNY

Estimated binding specificities ?

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# IC=16.855 IC/col=0.991 n_of_columns=17

specificity:

A |   0   0  87  11  96   0   2  66   0   0   8   0   0   0  24  73  87
C |  96   0   5   5   0  96   5   8  96   0  13   0   0  96  24  10   2
G |   0   0   2  69   0   0  87  11   0   0  70  96   0   0  24   8   2
T |   0  96   2  11   0   0   2  11   0  96   5   0  96   0  24   5   5

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updated Mon Sep 9 22:53:52 2024