4l62_IJKL : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA TRANSCRIPTIONAL REGULATOR PA2196 BOUND TO ITS OPERATOR DNA
reference	Choe et al. Biochem.Biophys.Res.Commun. 440 317 2013
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4l62_I interface=38,40,42,43, syddtrqhlldtgyrimavkgfsgvglneilqsagvpKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_J interface=25,34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglNeilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_K interface=27,28,40,42, syddtrqhlldtgyrimavkgfsgvgLNeilqsagvpkgSfYhyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_L interface=34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglneilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle
interface signature	KSYH/NPKSYH/LNSY/PKSYH

Estimated binding specificities ?

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# IC=17.747 IC/col=1.044 n_of_columns=17

specificity:

A |   0   0  96   5  96   0   6  80   0   0   5   0   0   0  24  80  80
C |  96   0   0   5   0  96   5   5  96   0   6   0   0  96  24   5   5
G |   0   0   0  80   0   0  80   5   0   0  80  96   0   0  24   5   5
T |   0  96   0   6   0   0   5   6   0  96   5   0  96   0  24   6   6

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updated Fri Dec 13 20:36:21 2024