4ldx_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF ARABIDOPSIS THALIANA AUXIN RESPONSE FACTOR 1 (ARF1) IN COMPLEX WITH PROTOMOR-LIKE SEQUENCE ER7
reference	van den Berg et al. 'Cell(Cambridge,Mass.)' 156 577 2014
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	DNA-binding pseudobarrel domain;
reference complex	6ycq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ldx_A interface=116,121,166,169,171, sdalcrelwhacagplvtlpregervyyfpeghmeqleasmhqgleqqmpsfnlpskilckviniqrraepetdevyaqitllpeldqseptspdapvqepekctvhsfcktltaSdtstHggfsvlrrhaddclppldmsqqppwqelvatdlhnsewhfrhifRgqPrRhllttgwsvfvsskklvagdafiflrgeneelrvgvrrhmrqpssvisshsmhigvlataahaittgtifsvfykprtsrsefivsvnryleaktqklsvgmrfkmrfegkrfsgtivgvqenkssvwhdsewrslkvqwdepssvfrpervspwelepln > 4ldx_B interface=117,122,167,170,172, lsdalcrelwhacagplvtlpregervyyfpeghmeqleasmhqgleqqmpsfnlpskilckviniqrraepetdevyaqitllpeldqseptspdapvqepekctvhsfcktltaSdtstHggfsvlrrhaddclppldmsqqppwqelvatdlhnsewhfrhifRgqPrRhllttgwsvfvsskklvagdafiflrgeneelrvgvrrhmrqqtnipssvisshsmhigvlataahaittgtifsvfykprtsrsefivsvnryleaktqklsvgmrfkmrfepekrfsgtivgvqenkssvwhdsewrslkvqwdepssvfrpervspwelepl
interface signature	SHRPR/SHRPR

Estimated binding specificities ?

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# IC=15.878 IC/col=0.794 n_of_columns=20

specificity:

A |   0   0   0   3  24   3   9   0   0  24  24  24   1   0   1  55  24  95   0  96
C |   0   0   0   3  24  11  61  96  88  24  24  24   1   0   4  15  24   1  94   0
G |   0   0  96   3  24  17   1   0   5  24  24  24  93  96  90  15  24   0   2   0
T |  96  96   0  87  24  65  25   0   3  24  24  24   1   0   1  11  24   0   0   0

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updated Wed Jun 24 21:57:48 2026