4lll_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=3.04, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lll_A interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lll_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=11.811 IC/col=0.622 n_of_columns=19

specificity:

A |   2   0  24  24  24   4  96  11  88  24  24   0   2   0  88  78  24  24  90
C |   2   2  24  24  24   2   0  11   2  24  24   0  67   0   2   2  24  24   2
G |   4   0  24  24  24   2   0  60   4  24  24   0  16   0   4  14  24  24   2
T |  88  94  24  24  24  88   0  14   2  24  24  96  11  96   2   2  24  24   2

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updated Wed Jul 30 02:11:57 2025