4lll_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=3.04, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lll_A interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lll_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=11.800 IC/col=0.621 n_of_columns=19

specificity:

A |   4  24  24   6   2  96  14  96  24  24   0  11   0  88  24  24  24  96  74
C |   2  24  24   4   2   0  11   0  24  24   0  50   0   6  24  24  24   0  14
G |   2  24  24   2   6   0  69   0  24  24   0  21   0   0  24  24  24   0   4
T |  88  24  24  84  86   0   2   0  24  24  96  14  96   2  24  24  24   0   4

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updated Mon Sep 9 22:59:36 2024