| structure name | CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX (MEPR) |
| reference | Brennan et al. 'Nucleic 42 2774 2014 |
| source | STAPHYLOCOCCUS AUREUS |
| experiment | X-ray (resolution=2.84, R-factor=0.208) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; |
| multimeric complexes | 4lll_AB 4lll_CD 4lll_IJ 4lln_AB 4lln_CD 4lln_IJ |
| redundant complexes |  4lll_D
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TPTSNR |
Estimated binding specificities ?
| contact |  |
A | 0 9 0 73 75 24 24 73 96 C | 0 73 0 7 7 24 24 7 0 G | 0 7 0 7 7 24 24 9 0 T | 96 7 96 9 7 24 24 7 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MEPR | ||
| GTTAG | PubMed | 4lln_I(2.93e-03), 4lln_CD(1.29e-02), 4lll_D(2.95e-03) |
| GTTAGAT | PubMed | 4lln_I(3.84e-04), 4lll_AB(6.35e-03), 4lll_CD(6.40e-03), ... (total=8) |
Dendrogram of similar interfaces ?
matrix format--DCLT--AGTTRG----RG--RA---- L +-----------------------------5h3r_A +-2 ----RGSTRTSTHG--------RA---- L ! ! +------------------3zpl_B +-3 +----------1 --ITRGECSCSGKG-------------- L ! ! +------------------5i2d_R +-4 ! TT----KATTQTTG--LTRTKA--FTYT L ! ! +-----------------------------2p7c_B --5 ! ----------------YG---------- ! +-----------------------------3eyi_B ! ----RGTCTA--RGNT------RT---- L +-----------------------------4fx4_B |
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updated Fri Sep 13 18:28:21 2024