4lll_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=3.04, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lll_C interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lll_D interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=10.612 IC/col=0.559 n_of_columns=19

specificity:

A |   2   0  24  24  13   0  96   5  90  24  24  24  24   0  76  64  24  24  87
C |   2   0  24  24  14   2   0   2   2  24  24  24  24   0  14   7  24  24   5
G |   2   0  24  24   5   4   0  87   0  24  24  24  24   0   2  11  24  24   2
T |  90  96  24  24  64  90   0   2   4  24  24  24  24  96   4  14  24  24   2

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updated Wed Jul 30 02:11:43 2025