4lll_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=3.04, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lll_C interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lll_D interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=10.077 IC/col=0.530 n_of_columns=19

specificity:

A |   0  24  24  18   5  96  24  24  24  24   2   5   0  85  55  24  24  93  90
C |   3  24  24  15   1   0  24  24  24  24   2  74   0   8  13  24  24   0   0
G |   0  24  24  10   5   0  24  24  24  24   2  12   0   1  10  24  24   2   4
T |  93  24  24  53  85   0  24  24  24  24  90   5  96   2  18  24  24   1   2

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updated Mon Sep 9 22:59:18 2024