4lln_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_A interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lln_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=15.834 IC/col=0.754 n_of_columns=21

specificity:

A |   0   0  24  24   2   1  96   7  93  24  24   2  12   0  93  93  24  24  90  88  75
C |   0   0  24  24   0   2   0  12   1  24  24   2  67   0   0   2  24  24   0   4   7
G |   0   0  24  24   2   0   0  67   0  24  24   4   7   0   3   0  24  24   2   2   2
T |  96  96  24  24  92  93   0  10   2  24  24  88  10  96   0   1  24  24   4   2  12

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updated Wed Jul 30 02:12:42 2025