4lln_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_A interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lln_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=15.088 IC/col=0.718 n_of_columns=21

specificity:

A |   7   9   2  24  24   2   2  96   8  89  24  24   2   8   0  96  94  24  24  96  90
C |  10  10   3  24  24   2   2   0   6   2  24  24   3  76   0   0   2  24  24   0   2
G |   8   8   2  24  24   2   0   0  73   3  24  24   2   6   0   0   0  24  24   0   2
T |  71  69  89  24  24  90  92   0   9   2  24  24  89   6  96   0   0  24  24   0   2

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updated Mon Sep 9 23:00:13 2024