4lln_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_A interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lln_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=15.162 IC/col=0.722 n_of_columns=21

specificity:

A |  14  12   2  24  24   0   0  96   8  91  24  24   0  10   0  93  96  24  24  96  94
C |  13  14   1  24  24   0   0   0  14   2  24  24   1  66   0   2   0  24  24   0   2
G |  10  11   2  24  24   0   0   0  61   0  24  24   2  12   0   0   0  24  24   0   0
T |  59  59  91  24  24  96  96   0  13   3  24  24  93   8  96   1   0  24  24   0   0

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updated Wed Jun 24 21:59:48 2026