4lln_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_C interface=59,61,62,64,65,84, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lln_D interface=61,63,64,66,67, sneftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSN

Estimated binding specificities ?

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# IC=11.023 IC/col=0.735 n_of_columns=15

specificity:

A |   3   3  96   3  84  24  24   5   3   0  84  84  24  24  96
C |   3   6   0   3   6  24  24   0  80   0   3   3  24  24   0
G |   3   3   0  84   3  24  24   3  10   0   3   3  24  24   0
T |  87  84   0   6   3  24  24  88   3  96   6   6  24  24   0

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updated Mon Sep 9 23:00:01 2024