4lln_IJ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_I interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlssl > 4lln_J interface=61,63,64,67,88, sneftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvsNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTNR

Estimated binding specificities ?

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# IC=14.591 IC/col=0.730 n_of_columns=20

specificity:

A |   0   0  24  24   8   8  96   4  72  24  24   0   4   0  84  84  24  24  96  96
C |   0   0  24  24   8   8   0   4   8  24  24   0  92   0   4   4  24  24   0   0
G |   0   0  24  24  12   8   0  84   8  24  24   0   0   0   4   4  24  24   0   0
T |  96  96  24  24  68  72   0   4   8  24  24  96   0  96   4   4  24  24   0   0

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updated Mon Sep 9 23:00:26 2024