4m9e_A : 3D-footprint complex

structure name	STRUCTURE OF KLF4 ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH METHYLATED DNA (Krueppel-like factor 4)
reference	Olanrewaju et al. 'Nucleic 42 4859 2014
source	Mus musculus
experiment	X-ray (resolution=1.85, R-factor=0.189)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4m9e_A interface=15,17,18,45,46,47,51,73,74,75,76, thtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDeltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRSDRRSDH

Estimated binding specificities ?

readout + contact

# IC=10.003 IC/col=1.000 n_of_columns=10

specificity:

A |  17  88   0   0   9   0   7   0   7   0
C |  14   1   0   0  14   0   1   0   1  96
G |  51   7  96  96  14  96   0  96  81   0
T |  14   0   0   0  59   0  88   0   7   0

scan!

home
updated Thu Sep 12 19:50:43 2024