4m9e_A : 3D-footprint complex

structure name	STRUCTURE OF KLF4 ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH METHYLATED DNA (Krueppel-like factor 4)
reference	Olanrewaju et al. 'Nucleic 42 4859 2014
source	Mus musculus
experiment	X-ray (resolution=1.85, R-factor=0.189)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4m9e_A interface=15,17,18,45,46,47,51,73,74,75,76, thtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDeltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRSDRRSDH

Estimated binding specificities ?

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# IC=8.004 IC/col=0.800 n_of_columns=10

specificity:

A |   9   9   0  96  24  24   0   0   0   9
C |  11  67  96   0  24  24  96  96   0  69
G |  67  11   0   0  24  24   0   0   0   9
T |   9   9   0   0  24  24   0   0  96   9

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updated Tue Dec 17 00:00:07 2024