Estimated binding specificities ?

structure nameDISTINCT STRUCTURAL FEATURES OF TFAM DRIVE MITOCHONDRIAL DNA PACKAGING VERSUS TRANSCRIPTIONAL ACTIVATION
referenceLovely et al. 'Nat 5 3077 2014
experimentX-ray (resolution=2.81, R-factor=0.218)
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
multimeric complexes4nnu_AB 4nod_ABGH
redundant complexes4nod_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
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# IC=6.854 IC/col=0.381 n_of_columns=18 specificity:   
A |  74   0  21  21  24  24  24  24  24  24  24   7   0   0  60  24  21   0
C |   7   0  21  23  24  24  24  24  24  24  24   7   0   0  12  24  33   0
G |   7  96  23  21  24  24  24  24  24  24  24  74  96  96  12  24  21  96
T |   8   0  31  31  24  24  24  24  24  24  24   8   0   0  12  24  21   0
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updated Tue Dec 19 09:09:59 2023