4noe_ABCDE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DDRB BOUND TO 30B SSDNA
reference	Sugiman-Marangos et al. Proc.Natl.Acad.Sci.USA 113 4308 2016
source	Deinococcus radiodurans
experiment	X-ray (resolution=2.20, R-factor=?)
reference complex	4noe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4noe_A interface=81,83,91,93,94,96,98,100,113,115,119,121,128, mlqiefitdlgarvtvnvehesrlldvqrhygrlgwtsgeipsggyqfpieneadfdwsligarkwkeelvihrghayrrReLeavdsrkLkLPaAiKySrgakvsdpqhvrEkAdgdIeYvslaifRggkrqeryavp > 4noe_B interface=79,81,88,89,91,93,95,108,110,114,116,123, mlqiefitdlgarvtvnvehesrlldvqrhygrlgwtsgeipsggyqfpieneadfdwsligarkwelvihrghayrrReLeavdlkLPaAiKySrgakvsdpqhvrEkAdgdIeYvslaifRggkrqeryavp > 4noe_C interface=80,82,88,89,91,93,95,108,110,114,116,123, tmlqiefitdlgarvtvnvehesrlldvqrhygrlgwtsgeipsggyqfpieneadfdwsligarkwelvihrghayrrReLeavdkLPaAiKySrgakvsdpqhvrEkAdgdIeYvslaifRggkrqeryavp > 4noe_D interface=81,83,87,88,90,92,94,107,109,110,113,115,122, ftmlqiefitdlgarvtvnvehesrlldvqrhygrlgwtsgeipsggyqfpieneadfdwsligarkwelvihrghayrrReLeavLPaAiKySrgakvsdpqhvrEkADgdIeYvslaifRggkrqeryavp > 4noe_E interface=87,89,96,97,99,101,103,116,118,122,124,129,131, ftmlqiefitdlgarvtvnvehesrlldvqrhygrlgwtsgeipsggyqfpieneadfdwsligarkwkspegeelvihrghayrrReLeavdlkLPaAiKySrgakvsdpqhvrEkAdgdIeYvslaIfRggkrqeryavp
interface signature	RLLLPAKSEAIYR/RLLPAKSEAIYR/RLLPAKSEAIYR/RLLPAKSEADIYR/RLLPAKSEAIYIR

Estimated binding specificities ?

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# IC=30.065 IC/col=1.002 n_of_columns=30

specificity:

A |   0   0   0   0  24   6   0   0   0   0  24   6   0   0   0   0  24   6   0   0   0   0  24   6   0   0   6   0  24   0
C |   0   0   0  96  24  78   0   0   0  96  24  78   0   0   0  96  24  78   0   0   0  96  24  78   0   0   6  96  24  96
G |   0   0  96   0  24   6   0   0  96   0  24   6   0   0  96   0  24   6   0   0  96   0  24   6   0   0  78   0  24   0
T |  96  96   0   0  24   6  96  96   0   0  24   6  96  96   0   0  24   6  96  96   0   0  24   6  96  96   6   0  24   0

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updated Mon Sep 9 23:05:19 2024