4osi_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TAL EFFECTOR DHAX3 WITH NI RVD AT 2.8 ANGSTROM RESOLUTION (HAX3)
reference	Yan et al. 'Protein 5 297 2014
source	XANTHOMONAS CAMPESTRIS PV. ARMORACIAE
experiment	X-ray (resolution=2.85, R-factor=0.245)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
reference complex	4osh_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4osi_A interface=31,66,100,134,270,338,406, ralealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasnIggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkk
interface signature	RDDDIDD

Estimated binding specificities ?

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# IC=7.772 IC/col=0.707 n_of_columns=11

specificity:

A |   0  60  12  24  16  96  24  12   0   0   0
C |   0  12  12  24  12   0  24  12   0   0   0
G |  96  12  60  24  12   0  24  16  96  96  96
T |   0  12  12  24  56   0  24  56   0   0   0

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updated Thu Sep 12 19:56:29 2024