structure name | WILMS TUMOR PROTEIN (WT1) ZINC FINGERS IN COMPLEX WITH FORMYLATED DNA (Wilms tumor protein, isoform 4CRA_a) |
reference | Olanrewaju et al. 'Genes 28 2304 2014 |
source | Homo sapiens |
experiment | X-ray (resolution=1.54, R-factor=0.162) |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
redundant complexes | 4r2s 4r2r 4r2e 4r2p |
reference complex | 5kl3_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RDQRRSDHTRDER |
Estimated binding specificities ?
contact |
A | 9 0 8 0 3 2 0 10 16 C | 9 96 8 0 5 2 0 13 16 G | 67 0 72 0 85 88 96 63 16 T | 11 0 8 96 3 4 0 10 48scan! |
Dendrogram of similar interfaces ?
matrix format----RGSTDAQG--RG--RG--DCHG--TTRG--DAEC--RG-- L +4r2q_A +------1 ----RA----NC--------ATSGDC--KGDCPTSGSARTKG-- L +-6 +2gli_A ! ! PCYCRG--DA----RG--RG--DCHG----RG--DCEC--RG-- L +-----7 +------2prt_A ! ! ----QA--SGNA--KG--QASTSCDC--KGRG--DCHA--RG-- L +---9 +-------1mey_C ! ! ----RG--DCEC--RG--RG--DCHG------------------ L ! ! +------1f2i_J ! +------5 ----------------RGST--YGYC----QC--TGSTRGYT-- L ! +------4is1_C ! ----EC--SCKG--RG--LT--FCNA----QA--TTNA------ L +-11 +1ubd_C ! ! +----------3 ----DA--SCHG--RGRGDC--SCNA----NCKTSAHG--RG-- L ! ! ! +5ei9_F ! ! +---8 ----RGSTDTEG--RG--RGSGDCHG--TTRG--DAEG--RG-- L ! ! ! ! +4x9j_A +--12 +-10 +----------2 --------KGDC--RG--QARGATNA----QA--ATHG------ L ! ! ! +2i13_A ! ! ! ----QA--TCNA------QAHTTT----QATTLAHGTCDTRG-- L ! ! +--------------1g2d_F +-13 ! ----QA--TTNA----STQAQTATSTNTATTTLAHGTC--RG-- L ! ! ! +-1g2f_F ! ! +------------------4 --------TTSG--RG--LT--ETYC----NTYGQG-------- L +-14 ! +-4f6m_A ! ! ! ----KG--WTKA----------HCHG--RGTA--ACNA--KGRG L ! ! +------------------------1tf6_A -15 ! ----HTITSTNACTRG--RG--DCNA------------------ L ! +-------------------------2drp_D ! ------------------RG--DGEC--RGRGSGDCHA------ L +--------------------------2wbs_A |
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updated Thu Sep 12 20:01:55 2024