4rb2_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 SEMET-FUR- MN2+-FEOAB1 OPERATOR
reference	Deng et al. 'Nat 6 7642 ?
source	Magnetospirillum gryphiswaldense
experiment	X-ray (resolution=2.82, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4rb3_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rb2_C interface=53,54,56,57, mvsrieqrcidkgmkmtdqrrviaqvlsdsadhpdveevyrratakdprisiATvYRtvrlfeeesilerhdfgdraryeeapsehhdhlidvnsarvieftspeiealqreiarkhgfrlvghrlelygvplt > 4rb2_D interface=15,51,53,56,57, mvsrieqrcidkgmKmtdqrrviaqvlsdsadhpdveevyrratakdpriSiAtvYRtvrlfeeesilerhdfgdgraryeeapsehhdhlidvnsarvieftspeiealqreiarkhgfrlvghrlelygvpl
interface signature	ATYR/KSAYR

Estimated binding specificities ?

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# IC=11.139 IC/col=0.619 n_of_columns=18

specificity:

A |   5  24  24  24   5   0   0  80  80  81  24  24  24   6  24   0   0   0
C |   5  24  24  24   5   0  96   6   5   5  24  24  24   5  24   0   0  96
G |   6  24  24  24   5  96   0   5   5   5  24  24  24   5  24   0  96   0
T |  80  24  24  24  81   0   0   5   6   5  24  24  24  80  24  96   0   0

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updated Mon Sep 9 23:34:34 2024