4rb3_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR (DNA-binding transcriptional dual regulator of siderophore biosynthesis and transportFur family)
reference	Deng et al. 'Nat 6 7642 ?
source	Magnetospirillum gryphiswaldense
experiment	X-ray (resolution=2.60, R-factor=0.234)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Ferric uptake regulator family;
multimeric complexes	4rb1_AB 4rb2_CD 4rb3_CD
redundant complexes	4rb1_A 4rb2_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rb3_D interface=14,50,52,55,56, vsrieqrlidkglKvtdqrrviaqvlsdsadhpdveevyrratakdpriSiAtvYRtvrlfeeesilerhdfgdgraryeeapsehhdhlidvnsarvieftspeiealqreiarkhgfrlvghrlelygvpl
interface signature	KSAYR

Estimated binding specificities ?

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# IC=6.633 IC/col=0.663 n_of_columns=10

specificity:

A |   0  11   0  11   0  96  24  24  24  67
C |   0   9   0   9  96   0  24  24  24  11
G |   0   9   0  67   0   0  24  24  24   9
T |  96  67  96   9   0   0  24  24  24   9

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Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 18:44:20 2024