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structure nameCRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
(DNA-binding transcriptional dual regulator of siderophore biosynthesis and transportFur family)
referenceDeng et al. 'Nat 6 7642 ?
sourceMagnetospirillum gryphiswaldense
experimentX-ray (resolution=2.60, R-factor=0.234)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFerric uptake regulator family;
multimeric complexes4rb1_AB 4rb2_CD 4rb3_CD
redundant complexes4rb1_A 4rb2_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKSAYR

Estimated binding specificities ?

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# IC=6.672 IC/col=0.667 n_of_columns=10 specificity:   
A |   0   9   0   9   0  96  24  24  24  67
C |   0   9   0   9  96   0  24  24  24   9
G |   0  11   0  69   0   0  24  24  24   9
T |  96  67  96   9   0   0  24  24  24  11
scan!

Dendrogram of similar interfaces ?

matrix format
  
  KA----SG--AT----YTRG----------------------   L                                  +4rb3_D    
                                                                    +-------------3 
  ----YAKTPTPG----YTRG----------------------   L                    !             +4mtd_D    
                                                               +----7 
  --TT------KATT--QTTG----LTRT----KA----FTYT   L               !    !        +-----2p7c_B    
                                                          +----9    +--------6 
  ------------------RC----YG--------KT------              !    !             +-----2acj_B    
                                                          !    ! 
  --------------VT----STRG------------WT----   L          !    +-------------------6lxn_A    
                                                      +--10  
  ----------------NAST--RGHT--STLT----------   L      !   !                       +7cby_C    
                                                      !   !                   +---4 
  ----------------NAST--RGHT--STFT----------   L      !   !                   !   +1vtn_C    
                                                   +-11   +-------------------5 
  ----------------NAST--RTHT--ST------------   L   !  !                       !    +3l2c_A    
                                                   !  !                       +----1 
  ----------------NAST--RTHT--STLT----------   L   !  !                            +4lg0_A    
                                                   !  !  
  ------------------NT------NA--IARG--------   L -12  +----------------------------4cyc_B    
                                                   !  
  ----------------QTVA----QTNA--------------   L   !                            +8osb_E    
                                                   !           +----------------2 
  ------------------IA----QTNA--------------   L   +-----------8                +5ego_B    
                                                               ! 
  ------------------IA----QCNA--YC----------   L               +----------------3rkq_B    
                                                 

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updated Sat Jan 10 07:26:05 2026