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structure nameCRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
(DNA-binding transcriptional dual regulator of siderophore biosynthesis and transportFur family)
referenceDeng et al. 'Nat 6 7642 ?
sourceMagnetospirillum gryphiswaldense
experimentX-ray (resolution=2.60, R-factor=0.234)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFerric uptake regulator family;
multimeric complexes4rb1_AB 4rb2_CD 4rb3_CD
redundant complexes4rb1_A 4rb2_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKSAYR

Estimated binding specificities ?

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# IC=6.711 IC/col=0.671 n_of_columns=10 specificity:   
A |   9  24  24  24   0   0   9  96  67  96
C |   9  24  24  24   0   0  69   0   9   0
G |   9  24  24  24   0  96   9   0  11   0
T |  69  24  24  24  96   0   9   0   9   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  KA----SG--AT----YTRG--------------------   L                              +4rb3_D    
                                                               +------------1 
  ----YAKTPTPG----YTRG--------------------   L          +------4            +4mtd_D    
                                                        !      ! 
  --TT------KATT--QTTG----LTRT----KA--FTYT   L      +---5      +-------------2p7c_B    
                                                    !   ! 
  --------------VT----STRG----------WT----   L   +--6   +--------------------6lxn_A    
                                                 !  ! 
  ----------------NAST--RGHT--STLT--------   L   !  !                 +------7cby_C    
                                               --7  +-----------------3 
  ----------------NAST--RTHT--ST----------   L   !                    +------3l2c_A    
                                                 ! 
  ----------------QTVA----QTNA------------   L   !                       +---8osb_E    
                                                 +-----------------------2 
  ------------------IA----QCNA--YC--------   L                           +---3rkq_B    
                                               

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updated Sun Aug 3 08:27:04 2025