4rb3_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
reference	Deng et al. 'Nat 6 7642 ?
source	Magnetospirillum gryphiswaldense
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4rb3_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rb3_C interface=53,56,57, mvsrieqrlidkglkvtdqrrviaqvlsdsadhpdveevyrratakdprisiAtvYRtvrlfeeesilerhdfgdgraryeeapsehhdhlidvnsarvieftspeiealqreiarkhgfrlvghrlelygvplts > 4rb3_D interface=14,50,52,55,56, vsrieqrlidkglKvtdqrrviaqvlsdsadhpdveevyrratakdpriSiAtvYRtvrlfeeesilerhdfgdgraryeeapsehhdhlidvnsarvieftspeiealqreiarkhgfrlvghrlelygvpl
interface signature	AYR/KSAYR

Estimated binding specificities ?

readout + contact

# IC=13.622 IC/col=0.717 n_of_columns=19

specificity:

A |   4   4   4  96  84  96  24  24  24   0   6   0   6   0  96  24  24  24  82
C |   4   4  82   0   4   0  24  24  24   0   4   0   4  96   0  24  24  24   6
G |   6  82   6   0   4   0  24  24  24   0   4   0  82   0   0  24  24  24   4
T |  82   6   4   0   4   0  24  24  24  96  82  96   4   0   0  24  24  24   4

scan!

home
updated Mon Sep 9 23:34:46 2024